Serveur d'exploration sur les variants du Covid

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Genetic diversity of SARS-CoV-2 and clinical, epidemiological characteristics of COVID-19 patients in Hanoi, Vietnam.

Identifieur interne : 000204 ( Main/Exploration ); précédent : 000203; suivant : 000205

Genetic diversity of SARS-CoV-2 and clinical, epidemiological characteristics of COVID-19 patients in Hanoi, Vietnam.

Auteurs : Tam Thi Nguyen [Viêt Nam] ; Thach Ngoc Pham [Viêt Nam] ; Trang Dinh Van [Viêt Nam] ; Trang Thu Nguyen [Viêt Nam] ; Diep Thi Ngoc Nguyen [Viêt Nam] ; Hoa Nguyen Minh Le [Viêt Nam] ; John-Sebastian Eden [Australie] ; Rebecca J. Rockett [Australie] ; Thuong Thi Hong Nguyen [Viêt Nam] ; Bich Thi Ngoc Vu [Viêt Nam] ; Giang Van Tran [Viêt Nam] ; Tan Van Le [Viêt Nam] ; Dominic E. Dwyer [Australie] ; H Rogier Van Doorn [Viêt Nam, Royaume-Uni]

Source :

RBID : pubmed:33201914

Descripteurs français

English descriptors

Abstract

A second cluster of COVID-19 cases imported from Europe occured in Vietnam from early March 2020. We describe 44 SARS-CoV-2 RT-PCR positive patients (cycle threshold value <30) admitted to the National Hospital for Tropical Diseases in Hanoi between March 6 and April 15 2020. Whole SARS-CoV-2 genomes from these patients were sequenced using Illumina Miseq and analysed for common genetic variants and relationships to local and globally circulating strains. Results showed that 32 cases were Vietnamese with a median age of 37 years (range 15-74 years), and 23 were male. Most cases were acquired outside Vietnam, mainly from the UK (n = 15), other European countries (n = 14), Russia (n = 6) and countries in Asia (n = 3). No cases had travelled from China. Forty-one cases had symptoms at admission, typically dry cough (n = 36), fever (n = 20), sore throat (n = 14) and diarrhoea (n = 12). Hospitalisation was long with a median of 25 days, most commonly from 20-29 days. All SARS-CoV-2 genomes were similar (92-100% sequence homology) to the reference sequence Wuhan_1 (NC_045512), and 32 strains belonged to the B.1.1 lineage. The three most common variants were linked, and included C3037T, C14408T (nsp12: P323L) and A23403G (S: D614G) mutations. This group of mutations often accompanied variant C241T (39/44 genomes) or GGG 28881..28883 AAC (33/44 genomes). The prevalence of the former reflected probable European origin of viruses, and the transition D614G was dominant in Vietnam. New variants were identified; however, none could be associated with disease severity.

DOI: 10.1371/journal.pone.0242537
PubMed: 33201914
PubMed Central: PMC7671498


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Genetic diversity of SARS-CoV-2 and clinical, epidemiological characteristics of COVID-19 patients in Hanoi, Vietnam.</title>
<author>
<name sortKey="Nguyen, Tam Thi" sort="Nguyen, Tam Thi" uniqKey="Nguyen T" first="Tam Thi" last="Nguyen">Tam Thi Nguyen</name>
<affiliation wicri:level="1">
<nlm:affiliation>Oxford University Clinical Research Unit (OUCRU), Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Oxford University Clinical Research Unit (OUCRU), Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Pham, Thach Ngoc" sort="Pham, Thach Ngoc" uniqKey="Pham T" first="Thach Ngoc" last="Pham">Thach Ngoc Pham</name>
<affiliation wicri:level="1">
<nlm:affiliation>National Hospital for Tropical Diseases, Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>National Hospital for Tropical Diseases, Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Van, Trang Dinh" sort="Van, Trang Dinh" uniqKey="Van T" first="Trang Dinh" last="Van">Trang Dinh Van</name>
<affiliation wicri:level="1">
<nlm:affiliation>National Hospital for Tropical Diseases, Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>National Hospital for Tropical Diseases, Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Nguyen, Trang Thu" sort="Nguyen, Trang Thu" uniqKey="Nguyen T" first="Trang Thu" last="Nguyen">Trang Thu Nguyen</name>
<affiliation wicri:level="1">
<nlm:affiliation>Oxford University Clinical Research Unit (OUCRU), Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Oxford University Clinical Research Unit (OUCRU), Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Nguyen, Diep Thi Ngoc" sort="Nguyen, Diep Thi Ngoc" uniqKey="Nguyen D" first="Diep Thi Ngoc" last="Nguyen">Diep Thi Ngoc Nguyen</name>
<affiliation wicri:level="1">
<nlm:affiliation>Oxford University Clinical Research Unit (OUCRU), Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Oxford University Clinical Research Unit (OUCRU), Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Le, Hoa Nguyen Minh" sort="Le, Hoa Nguyen Minh" uniqKey="Le H" first="Hoa Nguyen Minh" last="Le">Hoa Nguyen Minh Le</name>
<affiliation wicri:level="1">
<nlm:affiliation>National Hospital for Tropical Diseases, Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>National Hospital for Tropical Diseases, Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Eden, John Sebastian" sort="Eden, John Sebastian" uniqKey="Eden J" first="John-Sebastian" last="Eden">John-Sebastian Eden</name>
<affiliation wicri:level="4">
<nlm:affiliation>The University of Sydney, Marie Bashir Institute for Infectious Disease and Biosecurity, Westmead, New South Wales, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>The University of Sydney, Marie Bashir Institute for Infectious Disease and Biosecurity, Westmead, New South Wales</wicri:regionArea>
<orgName type="university">Université de Sydney</orgName>
<placeName>
<settlement type="city">Sydney</settlement>
<region type="état">Nouvelle-Galles du Sud</region>
</placeName>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Westmead Institute for Medical Research, Centre for Virus Research, Westmead, New South Wales, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Westmead Institute for Medical Research, Centre for Virus Research, Westmead, New South Wales</wicri:regionArea>
<wicri:noRegion>New South Wales</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Rockett, Rebecca J" sort="Rockett, Rebecca J" uniqKey="Rockett R" first="Rebecca J" last="Rockett">Rebecca J. Rockett</name>
<affiliation wicri:level="4">
<nlm:affiliation>The University of Sydney, Marie Bashir Institute for Infectious Disease and Biosecurity, Westmead, New South Wales, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>The University of Sydney, Marie Bashir Institute for Infectious Disease and Biosecurity, Westmead, New South Wales</wicri:regionArea>
<orgName type="university">Université de Sydney</orgName>
<placeName>
<settlement type="city">Sydney</settlement>
<region type="état">Nouvelle-Galles du Sud</region>
</placeName>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Centre for Infectious Diseases and Microbiology - Public Health, Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, New South Wales, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Centre for Infectious Diseases and Microbiology - Public Health, Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, New South Wales</wicri:regionArea>
<wicri:noRegion>New South Wales</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Nguyen, Thuong Thi Hong" sort="Nguyen, Thuong Thi Hong" uniqKey="Nguyen T" first="Thuong Thi Hong" last="Nguyen">Thuong Thi Hong Nguyen</name>
<affiliation wicri:level="1">
<nlm:affiliation>Oxford University Clinical Research Unit (OUCRU), Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Oxford University Clinical Research Unit (OUCRU), Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Vu, Bich Thi Ngoc" sort="Vu, Bich Thi Ngoc" uniqKey="Vu B" first="Bich Thi Ngoc" last="Vu">Bich Thi Ngoc Vu</name>
<affiliation wicri:level="1">
<nlm:affiliation>Oxford University Clinical Research Unit (OUCRU), Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Oxford University Clinical Research Unit (OUCRU), Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Tran, Giang Van" sort="Tran, Giang Van" uniqKey="Tran G" first="Giang Van" last="Tran">Giang Van Tran</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Infectious Diseases, Hanoi Medical University, Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Department of Infectious Diseases, Hanoi Medical University, Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Virology and Parasitology, National Hospital for Tropical Diseases, Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Department of Virology and Parasitology, National Hospital for Tropical Diseases, Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Le, Tan Van" sort="Le, Tan Van" uniqKey="Le T" first="Tan Van" last="Le">Tan Van Le</name>
<affiliation wicri:level="1">
<nlm:affiliation>Oxford University Clinical Research Unit, Ho Chi Minh city, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Oxford University Clinical Research Unit, Ho Chi Minh city</wicri:regionArea>
<wicri:noRegion>Ho Chi Minh city</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Dwyer, Dominic E" sort="Dwyer, Dominic E" uniqKey="Dwyer D" first="Dominic E" last="Dwyer">Dominic E. Dwyer</name>
<affiliation wicri:level="4">
<nlm:affiliation>The University of Sydney, Marie Bashir Institute for Infectious Disease and Biosecurity, Westmead, New South Wales, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>The University of Sydney, Marie Bashir Institute for Infectious Disease and Biosecurity, Westmead, New South Wales</wicri:regionArea>
<orgName type="university">Université de Sydney</orgName>
<placeName>
<settlement type="city">Sydney</settlement>
<region type="état">Nouvelle-Galles du Sud</region>
</placeName>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Centre for Infectious Diseases and Microbiology - Public Health, Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, New South Wales, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Centre for Infectious Diseases and Microbiology - Public Health, Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, New South Wales</wicri:regionArea>
<wicri:noRegion>New South Wales</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, New South Wales Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Centre for Infectious Diseases and Microbiology Laboratory Services, New South Wales Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, New South Wales</wicri:regionArea>
<wicri:noRegion>New South Wales</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Van Doorn, H Rogier" sort="Van Doorn, H Rogier" uniqKey="Van Doorn H" first="H Rogier" last="Van Doorn">H Rogier Van Doorn</name>
<affiliation wicri:level="1">
<nlm:affiliation>Oxford University Clinical Research Unit (OUCRU), Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Oxford University Clinical Research Unit (OUCRU), Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
<affiliation wicri:level="4">
<nlm:affiliation>Nuffield Department of Clinical Medicine, University of Oxford, Oxford, United Kingdom.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Nuffield Department of Clinical Medicine, University of Oxford, Oxford</wicri:regionArea>
<placeName>
<settlement type="city">Oxford</settlement>
<region type="country">Angleterre</region>
<region type="comté" nuts="2">Oxfordshire</region>
</placeName>
<orgName type="university">Université d'Oxford</orgName>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PubMed</idno>
<date when="2020">2020</date>
<idno type="RBID">pubmed:33201914</idno>
<idno type="pmid">33201914</idno>
<idno type="doi">10.1371/journal.pone.0242537</idno>
<idno type="pmc">PMC7671498</idno>
<idno type="wicri:Area/Main/Corpus">000096</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000096</idno>
<idno type="wicri:Area/Main/Curation">000096</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000096</idno>
<idno type="wicri:Area/Main/Exploration">000096</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">Genetic diversity of SARS-CoV-2 and clinical, epidemiological characteristics of COVID-19 patients in Hanoi, Vietnam.</title>
<author>
<name sortKey="Nguyen, Tam Thi" sort="Nguyen, Tam Thi" uniqKey="Nguyen T" first="Tam Thi" last="Nguyen">Tam Thi Nguyen</name>
<affiliation wicri:level="1">
<nlm:affiliation>Oxford University Clinical Research Unit (OUCRU), Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Oxford University Clinical Research Unit (OUCRU), Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Pham, Thach Ngoc" sort="Pham, Thach Ngoc" uniqKey="Pham T" first="Thach Ngoc" last="Pham">Thach Ngoc Pham</name>
<affiliation wicri:level="1">
<nlm:affiliation>National Hospital for Tropical Diseases, Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>National Hospital for Tropical Diseases, Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Van, Trang Dinh" sort="Van, Trang Dinh" uniqKey="Van T" first="Trang Dinh" last="Van">Trang Dinh Van</name>
<affiliation wicri:level="1">
<nlm:affiliation>National Hospital for Tropical Diseases, Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>National Hospital for Tropical Diseases, Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Nguyen, Trang Thu" sort="Nguyen, Trang Thu" uniqKey="Nguyen T" first="Trang Thu" last="Nguyen">Trang Thu Nguyen</name>
<affiliation wicri:level="1">
<nlm:affiliation>Oxford University Clinical Research Unit (OUCRU), Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Oxford University Clinical Research Unit (OUCRU), Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Nguyen, Diep Thi Ngoc" sort="Nguyen, Diep Thi Ngoc" uniqKey="Nguyen D" first="Diep Thi Ngoc" last="Nguyen">Diep Thi Ngoc Nguyen</name>
<affiliation wicri:level="1">
<nlm:affiliation>Oxford University Clinical Research Unit (OUCRU), Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Oxford University Clinical Research Unit (OUCRU), Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Le, Hoa Nguyen Minh" sort="Le, Hoa Nguyen Minh" uniqKey="Le H" first="Hoa Nguyen Minh" last="Le">Hoa Nguyen Minh Le</name>
<affiliation wicri:level="1">
<nlm:affiliation>National Hospital for Tropical Diseases, Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>National Hospital for Tropical Diseases, Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Eden, John Sebastian" sort="Eden, John Sebastian" uniqKey="Eden J" first="John-Sebastian" last="Eden">John-Sebastian Eden</name>
<affiliation wicri:level="4">
<nlm:affiliation>The University of Sydney, Marie Bashir Institute for Infectious Disease and Biosecurity, Westmead, New South Wales, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>The University of Sydney, Marie Bashir Institute for Infectious Disease and Biosecurity, Westmead, New South Wales</wicri:regionArea>
<orgName type="university">Université de Sydney</orgName>
<placeName>
<settlement type="city">Sydney</settlement>
<region type="état">Nouvelle-Galles du Sud</region>
</placeName>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Westmead Institute for Medical Research, Centre for Virus Research, Westmead, New South Wales, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Westmead Institute for Medical Research, Centre for Virus Research, Westmead, New South Wales</wicri:regionArea>
<wicri:noRegion>New South Wales</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Rockett, Rebecca J" sort="Rockett, Rebecca J" uniqKey="Rockett R" first="Rebecca J" last="Rockett">Rebecca J. Rockett</name>
<affiliation wicri:level="4">
<nlm:affiliation>The University of Sydney, Marie Bashir Institute for Infectious Disease and Biosecurity, Westmead, New South Wales, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>The University of Sydney, Marie Bashir Institute for Infectious Disease and Biosecurity, Westmead, New South Wales</wicri:regionArea>
<orgName type="university">Université de Sydney</orgName>
<placeName>
<settlement type="city">Sydney</settlement>
<region type="état">Nouvelle-Galles du Sud</region>
</placeName>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Centre for Infectious Diseases and Microbiology - Public Health, Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, New South Wales, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Centre for Infectious Diseases and Microbiology - Public Health, Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, New South Wales</wicri:regionArea>
<wicri:noRegion>New South Wales</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Nguyen, Thuong Thi Hong" sort="Nguyen, Thuong Thi Hong" uniqKey="Nguyen T" first="Thuong Thi Hong" last="Nguyen">Thuong Thi Hong Nguyen</name>
<affiliation wicri:level="1">
<nlm:affiliation>Oxford University Clinical Research Unit (OUCRU), Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Oxford University Clinical Research Unit (OUCRU), Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Vu, Bich Thi Ngoc" sort="Vu, Bich Thi Ngoc" uniqKey="Vu B" first="Bich Thi Ngoc" last="Vu">Bich Thi Ngoc Vu</name>
<affiliation wicri:level="1">
<nlm:affiliation>Oxford University Clinical Research Unit (OUCRU), Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Oxford University Clinical Research Unit (OUCRU), Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Tran, Giang Van" sort="Tran, Giang Van" uniqKey="Tran G" first="Giang Van" last="Tran">Giang Van Tran</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Infectious Diseases, Hanoi Medical University, Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Department of Infectious Diseases, Hanoi Medical University, Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Virology and Parasitology, National Hospital for Tropical Diseases, Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Department of Virology and Parasitology, National Hospital for Tropical Diseases, Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Le, Tan Van" sort="Le, Tan Van" uniqKey="Le T" first="Tan Van" last="Le">Tan Van Le</name>
<affiliation wicri:level="1">
<nlm:affiliation>Oxford University Clinical Research Unit, Ho Chi Minh city, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Oxford University Clinical Research Unit, Ho Chi Minh city</wicri:regionArea>
<wicri:noRegion>Ho Chi Minh city</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Dwyer, Dominic E" sort="Dwyer, Dominic E" uniqKey="Dwyer D" first="Dominic E" last="Dwyer">Dominic E. Dwyer</name>
<affiliation wicri:level="4">
<nlm:affiliation>The University of Sydney, Marie Bashir Institute for Infectious Disease and Biosecurity, Westmead, New South Wales, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>The University of Sydney, Marie Bashir Institute for Infectious Disease and Biosecurity, Westmead, New South Wales</wicri:regionArea>
<orgName type="university">Université de Sydney</orgName>
<placeName>
<settlement type="city">Sydney</settlement>
<region type="état">Nouvelle-Galles du Sud</region>
</placeName>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Centre for Infectious Diseases and Microbiology - Public Health, Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, New South Wales, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Centre for Infectious Diseases and Microbiology - Public Health, Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, New South Wales</wicri:regionArea>
<wicri:noRegion>New South Wales</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1">
<nlm:affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, New South Wales Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.</nlm:affiliation>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Centre for Infectious Diseases and Microbiology Laboratory Services, New South Wales Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, New South Wales</wicri:regionArea>
<wicri:noRegion>New South Wales</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Van Doorn, H Rogier" sort="Van Doorn, H Rogier" uniqKey="Van Doorn H" first="H Rogier" last="Van Doorn">H Rogier Van Doorn</name>
<affiliation wicri:level="1">
<nlm:affiliation>Oxford University Clinical Research Unit (OUCRU), Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Oxford University Clinical Research Unit (OUCRU), Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
<affiliation wicri:level="4">
<nlm:affiliation>Nuffield Department of Clinical Medicine, University of Oxford, Oxford, United Kingdom.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Nuffield Department of Clinical Medicine, University of Oxford, Oxford</wicri:regionArea>
<placeName>
<settlement type="city">Oxford</settlement>
<region type="country">Angleterre</region>
<region type="comté" nuts="2">Oxfordshire</region>
</placeName>
<orgName type="university">Université d'Oxford</orgName>
</affiliation>
</author>
</analytic>
<series>
<title level="j">PloS one</title>
<idno type="eISSN">1932-6203</idno>
<imprint>
<date when="2020" type="published">2020</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Adolescent (MeSH)</term>
<term>Adult (MeSH)</term>
<term>Aged (MeSH)</term>
<term>Betacoronavirus (genetics)</term>
<term>Betacoronavirus (isolation & purification)</term>
<term>COVID-19 (MeSH)</term>
<term>Coronavirus Infections (epidemiology)</term>
<term>Coronavirus Infections (virology)</term>
<term>Female (MeSH)</term>
<term>Genetic Variation (MeSH)</term>
<term>Humans (MeSH)</term>
<term>Male (MeSH)</term>
<term>Middle Aged (MeSH)</term>
<term>Pandemics (MeSH)</term>
<term>Pneumonia, Viral (epidemiology)</term>
<term>Pneumonia, Viral (virology)</term>
<term>Prevalence (MeSH)</term>
<term>SARS-CoV-2 (MeSH)</term>
<term>Travel-Related Illness (MeSH)</term>
<term>Vietnam (MeSH)</term>
<term>Young Adult (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>Adolescent (MeSH)</term>
<term>Adulte (MeSH)</term>
<term>Adulte d'âge moyen (MeSH)</term>
<term>Betacoronavirus (génétique)</term>
<term>Betacoronavirus (isolement et purification)</term>
<term>Femelle (MeSH)</term>
<term>Humains (MeSH)</term>
<term>Infections à coronavirus (virologie)</term>
<term>Infections à coronavirus (épidémiologie)</term>
<term>Jeune adulte (MeSH)</term>
<term>Maladie liée aux voyages (MeSH)</term>
<term>Mâle (MeSH)</term>
<term>Pandémies (MeSH)</term>
<term>Pneumopathie virale (virologie)</term>
<term>Pneumopathie virale (épidémiologie)</term>
<term>Prévalence (MeSH)</term>
<term>Sujet âgé (MeSH)</term>
<term>Variation génétique (MeSH)</term>
<term>Vietnam (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="geographic" xml:lang="en">
<term>Vietnam</term>
</keywords>
<keywords scheme="MESH" qualifier="epidemiology" xml:lang="en">
<term>Coronavirus Infections</term>
<term>Pneumonia, Viral</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Betacoronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>Betacoronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en">
<term>Betacoronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr">
<term>Betacoronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr">
<term>Infections à coronavirus</term>
<term>Pneumopathie virale</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en">
<term>Coronavirus Infections</term>
<term>Pneumonia, Viral</term>
</keywords>
<keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr">
<term>Infections à coronavirus</term>
<term>Pneumopathie virale</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Adolescent</term>
<term>Adult</term>
<term>Aged</term>
<term>COVID-19</term>
<term>Female</term>
<term>Genetic Variation</term>
<term>Humans</term>
<term>Male</term>
<term>Middle Aged</term>
<term>Pandemics</term>
<term>Prevalence</term>
<term>SARS-CoV-2</term>
<term>Travel-Related Illness</term>
<term>Young Adult</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Adolescent</term>
<term>Adulte</term>
<term>Adulte d'âge moyen</term>
<term>Femelle</term>
<term>Humains</term>
<term>Jeune adulte</term>
<term>Maladie liée aux voyages</term>
<term>Mâle</term>
<term>Pandémies</term>
<term>Prévalence</term>
<term>Sujet âgé</term>
<term>Variation génétique</term>
<term>Vietnam</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">A second cluster of COVID-19 cases imported from Europe occured in Vietnam from early March 2020. We describe 44 SARS-CoV-2 RT-PCR positive patients (cycle threshold value <30) admitted to the National Hospital for Tropical Diseases in Hanoi between March 6 and April 15 2020. Whole SARS-CoV-2 genomes from these patients were sequenced using Illumina Miseq and analysed for common genetic variants and relationships to local and globally circulating strains. Results showed that 32 cases were Vietnamese with a median age of 37 years (range 15-74 years), and 23 were male. Most cases were acquired outside Vietnam, mainly from the UK (n = 15), other European countries (n = 14), Russia (n = 6) and countries in Asia (n = 3). No cases had travelled from China. Forty-one cases had symptoms at admission, typically dry cough (n = 36), fever (n = 20), sore throat (n = 14) and diarrhoea (n = 12). Hospitalisation was long with a median of 25 days, most commonly from 20-29 days. All SARS-CoV-2 genomes were similar (92-100% sequence homology) to the reference sequence Wuhan_1 (NC_045512), and 32 strains belonged to the B.1.1 lineage. The three most common variants were linked, and included C3037T, C14408T (nsp12: P323L) and A23403G (S: D614G) mutations. This group of mutations often accompanied variant C241T (39/44 genomes) or GGG 28881..28883 AAC (33/44 genomes). The prevalence of the former reflected probable European origin of viruses, and the transition D614G was dominant in Vietnam. New variants were identified; however, none could be associated with disease severity.</div>
</front>
</TEI>
<pubmed>
<MedlineCitation Status="MEDLINE" Owner="NLM">
<PMID Version="1">33201914</PMID>
<DateCompleted>
<Year>2020</Year>
<Month>12</Month>
<Day>01</Day>
</DateCompleted>
<DateRevised>
<Year>2020</Year>
<Month>12</Month>
<Day>18</Day>
</DateRevised>
<Article PubModel="Electronic-eCollection">
<Journal>
<ISSN IssnType="Electronic">1932-6203</ISSN>
<JournalIssue CitedMedium="Internet">
<Volume>15</Volume>
<Issue>11</Issue>
<PubDate>
<Year>2020</Year>
</PubDate>
</JournalIssue>
<Title>PloS one</Title>
<ISOAbbreviation>PLoS One</ISOAbbreviation>
</Journal>
<ArticleTitle>Genetic diversity of SARS-CoV-2 and clinical, epidemiological characteristics of COVID-19 patients in Hanoi, Vietnam.</ArticleTitle>
<Pagination>
<MedlinePgn>e0242537</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0242537</ELocationID>
<Abstract>
<AbstractText>A second cluster of COVID-19 cases imported from Europe occured in Vietnam from early March 2020. We describe 44 SARS-CoV-2 RT-PCR positive patients (cycle threshold value <30) admitted to the National Hospital for Tropical Diseases in Hanoi between March 6 and April 15 2020. Whole SARS-CoV-2 genomes from these patients were sequenced using Illumina Miseq and analysed for common genetic variants and relationships to local and globally circulating strains. Results showed that 32 cases were Vietnamese with a median age of 37 years (range 15-74 years), and 23 were male. Most cases were acquired outside Vietnam, mainly from the UK (n = 15), other European countries (n = 14), Russia (n = 6) and countries in Asia (n = 3). No cases had travelled from China. Forty-one cases had symptoms at admission, typically dry cough (n = 36), fever (n = 20), sore throat (n = 14) and diarrhoea (n = 12). Hospitalisation was long with a median of 25 days, most commonly from 20-29 days. All SARS-CoV-2 genomes were similar (92-100% sequence homology) to the reference sequence Wuhan_1 (NC_045512), and 32 strains belonged to the B.1.1 lineage. The three most common variants were linked, and included C3037T, C14408T (nsp12: P323L) and A23403G (S: D614G) mutations. This group of mutations often accompanied variant C241T (39/44 genomes) or GGG 28881..28883 AAC (33/44 genomes). The prevalence of the former reflected probable European origin of viruses, and the transition D614G was dominant in Vietnam. New variants were identified; however, none could be associated with disease severity.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y">
<LastName>Nguyen</LastName>
<ForeName>Tam Thi</ForeName>
<Initials>TT</Initials>
<Identifier Source="ORCID">0000-0002-0282-7760</Identifier>
<AffiliationInfo>
<Affiliation>Oxford University Clinical Research Unit (OUCRU), Hanoi, Vietnam.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Pham</LastName>
<ForeName>Thach Ngoc</ForeName>
<Initials>TN</Initials>
<AffiliationInfo>
<Affiliation>National Hospital for Tropical Diseases, Hanoi, Vietnam.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Van</LastName>
<ForeName>Trang Dinh</ForeName>
<Initials>TD</Initials>
<AffiliationInfo>
<Affiliation>National Hospital for Tropical Diseases, Hanoi, Vietnam.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Nguyen</LastName>
<ForeName>Trang Thu</ForeName>
<Initials>TT</Initials>
<AffiliationInfo>
<Affiliation>Oxford University Clinical Research Unit (OUCRU), Hanoi, Vietnam.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Nguyen</LastName>
<ForeName>Diep Thi Ngoc</ForeName>
<Initials>DTN</Initials>
<AffiliationInfo>
<Affiliation>Oxford University Clinical Research Unit (OUCRU), Hanoi, Vietnam.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Le</LastName>
<ForeName>Hoa Nguyen Minh</ForeName>
<Initials>HNM</Initials>
<AffiliationInfo>
<Affiliation>National Hospital for Tropical Diseases, Hanoi, Vietnam.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Eden</LastName>
<ForeName>John-Sebastian</ForeName>
<Initials>JS</Initials>
<Identifier Source="ORCID">0000-0003-1374-3551</Identifier>
<AffiliationInfo>
<Affiliation>The University of Sydney, Marie Bashir Institute for Infectious Disease and Biosecurity, Westmead, New South Wales, Australia.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Westmead Institute for Medical Research, Centre for Virus Research, Westmead, New South Wales, Australia.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Rockett</LastName>
<ForeName>Rebecca J</ForeName>
<Initials>RJ</Initials>
<AffiliationInfo>
<Affiliation>The University of Sydney, Marie Bashir Institute for Infectious Disease and Biosecurity, Westmead, New South Wales, Australia.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Centre for Infectious Diseases and Microbiology - Public Health, Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, New South Wales, Australia.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Nguyen</LastName>
<ForeName>Thuong Thi Hong</ForeName>
<Initials>TTH</Initials>
<AffiliationInfo>
<Affiliation>Oxford University Clinical Research Unit (OUCRU), Hanoi, Vietnam.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Vu</LastName>
<ForeName>Bich Thi Ngoc</ForeName>
<Initials>BTN</Initials>
<AffiliationInfo>
<Affiliation>Oxford University Clinical Research Unit (OUCRU), Hanoi, Vietnam.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Tran</LastName>
<ForeName>Giang Van</ForeName>
<Initials>GV</Initials>
<AffiliationInfo>
<Affiliation>Department of Infectious Diseases, Hanoi Medical University, Hanoi, Vietnam.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Department of Virology and Parasitology, National Hospital for Tropical Diseases, Hanoi, Vietnam.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Le</LastName>
<ForeName>Tan Van</ForeName>
<Initials>TV</Initials>
<AffiliationInfo>
<Affiliation>Oxford University Clinical Research Unit, Ho Chi Minh city, Vietnam.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Dwyer</LastName>
<ForeName>Dominic E</ForeName>
<Initials>DE</Initials>
<AffiliationInfo>
<Affiliation>The University of Sydney, Marie Bashir Institute for Infectious Disease and Biosecurity, Westmead, New South Wales, Australia.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Centre for Infectious Diseases and Microbiology - Public Health, Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, New South Wales, Australia.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Centre for Infectious Diseases and Microbiology Laboratory Services, New South Wales Health Pathology - Institute of Clinical Pathology and Medical Research, Westmead, New South Wales, Australia.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>van Doorn</LastName>
<ForeName>H Rogier</ForeName>
<Initials>HR</Initials>
<AffiliationInfo>
<Affiliation>Oxford University Clinical Research Unit (OUCRU), Hanoi, Vietnam.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Nuffield Department of Clinical Medicine, University of Oxford, Oxford, United Kingdom.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<CollectiveName>OUCRU COVID-19 Research Group</CollectiveName>
</Author>
</AuthorList>
<Language>eng</Language>
<GrantList CompleteYN="Y">
<Grant>
<GrantID>106680/Z/14/Z</GrantID>
<Acronym>WT_</Acronym>
<Agency>Wellcome Trust</Agency>
<Country>United Kingdom</Country>
</Grant>
</GrantList>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2020</Year>
<Month>11</Month>
<Day>17</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>United States</Country>
<MedlineTA>PLoS One</MedlineTA>
<NlmUniqueID>101285081</NlmUniqueID>
<ISSNLinking>1932-6203</ISSNLinking>
</MedlineJournalInfo>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList>
<MeshHeading>
<DescriptorName UI="D000293" MajorTopicYN="N">Adolescent</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D000328" MajorTopicYN="N">Adult</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D000368" MajorTopicYN="N">Aged</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D000073640" MajorTopicYN="N">Betacoronavirus</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D000086382" MajorTopicYN="N">COVID-19</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D018352" MajorTopicYN="N">Coronavirus Infections</DescriptorName>
<QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName>
<QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D005260" MajorTopicYN="N">Female</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D008297" MajorTopicYN="N">Male</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D008875" MajorTopicYN="N">Middle Aged</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D058873" MajorTopicYN="N">Pandemics</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D011024" MajorTopicYN="N">Pneumonia, Viral</DescriptorName>
<QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName>
<QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D015995" MajorTopicYN="N">Prevalence</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D000086402" MajorTopicYN="N">SARS-CoV-2</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D000076082" MajorTopicYN="N">Travel-Related Illness</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D014744" MajorTopicYN="N" Type="Geographic">Vietnam</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D055815" MajorTopicYN="N">Young Adult</DescriptorName>
</MeshHeading>
</MeshHeadingList>
<CoiStatement>The authors have declared that no competing interests exist.</CoiStatement>
</MedlineCitation>
<PubmedData>
<History>
<PubMedPubDate PubStatus="received">
<Year>2020</Year>
<Month>09</Month>
<Day>08</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted">
<Year>2020</Year>
<Month>11</Month>
<Day>04</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez">
<Year>2020</Year>
<Month>11</Month>
<Day>17</Day>
<Hour>17</Hour>
<Minute>12</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed">
<Year>2020</Year>
<Month>11</Month>
<Day>18</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2020</Year>
<Month>12</Month>
<Day>2</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>epublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">33201914</ArticleId>
<ArticleId IdType="doi">10.1371/journal.pone.0242537</ArticleId>
<ArticleId IdType="pii">PONE-D-20-28215</ArticleId>
<ArticleId IdType="pmc">PMC7671498</ArticleId>
</ArticleIdList>
<ReferenceList>
<Reference>
<Citation>J Clin Virol. 2020 Jun;127:104379</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32361325</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2014 May 1;30(9):1312-3</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24451623</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Emerg Infect Dis. 2020 Jul;26(7):1624-1626</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32240079</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Clin Infect Dis. 2020 Jun 04;:</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32497212</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Glob Health Action. 2020 Dec 31;13(1):1776526</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32588779</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Infect. 2020 Aug;81(2):e175-e177</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32562797</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Infect Control Hosp Epidemiol. 2020 Aug;41(8):984-985</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32279697</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Brief Bioinform. 2019 Jul 19;20(4):1160-1166</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">28968734</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Lancet. 2020 Feb 15;395(10223):507-513</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32007143</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Virus Evol. 2020 Apr 10;6(1):veaa027</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32296544</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Epidemiol Infect. 2020 Jun 10;148:e114</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32517822</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Clin Infect Dis. 2020 Aug 01;:</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32738143</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Infect Genet Evol. 2020 Jul;81:104260</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32092483</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Lancet Infect Dis. 2020 Apr;20(4):408-409</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32085849</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Med Virol. 2020 May 28;:</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32462705</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>JAMA. 2020 Mar 17;323(11):1061-1069</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32031570</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Lancet Infect Dis. 2020 May;20(5):535-536</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32145188</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bioinformatics. 2012 Oct 15;28(20):2678-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">22914218</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell. 2020 Aug 20;182(4):812-827.e19</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32697968</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Bull World Health Organ. 2020 Jul 1;98(7):495-504</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32742035</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Lancet Child Adolesc Health. 2020 May;4(5):405-406</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32213326</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nat Microbiol. 2020 Nov;5(11):1403-1407</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32669681</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell. 2020 May 14;181(4):894-904.e9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32275855</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Nature. 2020 Mar;579(7798):265-269</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32015508</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
<affiliations>
<list>
<country>
<li>Australie</li>
<li>Royaume-Uni</li>
<li>Viêt Nam</li>
</country>
<region>
<li>Angleterre</li>
<li>Nouvelle-Galles du Sud</li>
<li>Oxfordshire</li>
</region>
<settlement>
<li>Oxford</li>
<li>Sydney</li>
</settlement>
<orgName>
<li>Université d'Oxford</li>
<li>Université de Sydney</li>
</orgName>
</list>
<tree>
<country name="Viêt Nam">
<noRegion>
<name sortKey="Nguyen, Tam Thi" sort="Nguyen, Tam Thi" uniqKey="Nguyen T" first="Tam Thi" last="Nguyen">Tam Thi Nguyen</name>
</noRegion>
<name sortKey="Le, Hoa Nguyen Minh" sort="Le, Hoa Nguyen Minh" uniqKey="Le H" first="Hoa Nguyen Minh" last="Le">Hoa Nguyen Minh Le</name>
<name sortKey="Le, Tan Van" sort="Le, Tan Van" uniqKey="Le T" first="Tan Van" last="Le">Tan Van Le</name>
<name sortKey="Nguyen, Diep Thi Ngoc" sort="Nguyen, Diep Thi Ngoc" uniqKey="Nguyen D" first="Diep Thi Ngoc" last="Nguyen">Diep Thi Ngoc Nguyen</name>
<name sortKey="Nguyen, Thuong Thi Hong" sort="Nguyen, Thuong Thi Hong" uniqKey="Nguyen T" first="Thuong Thi Hong" last="Nguyen">Thuong Thi Hong Nguyen</name>
<name sortKey="Nguyen, Trang Thu" sort="Nguyen, Trang Thu" uniqKey="Nguyen T" first="Trang Thu" last="Nguyen">Trang Thu Nguyen</name>
<name sortKey="Pham, Thach Ngoc" sort="Pham, Thach Ngoc" uniqKey="Pham T" first="Thach Ngoc" last="Pham">Thach Ngoc Pham</name>
<name sortKey="Tran, Giang Van" sort="Tran, Giang Van" uniqKey="Tran G" first="Giang Van" last="Tran">Giang Van Tran</name>
<name sortKey="Tran, Giang Van" sort="Tran, Giang Van" uniqKey="Tran G" first="Giang Van" last="Tran">Giang Van Tran</name>
<name sortKey="Van Doorn, H Rogier" sort="Van Doorn, H Rogier" uniqKey="Van Doorn H" first="H Rogier" last="Van Doorn">H Rogier Van Doorn</name>
<name sortKey="Van, Trang Dinh" sort="Van, Trang Dinh" uniqKey="Van T" first="Trang Dinh" last="Van">Trang Dinh Van</name>
<name sortKey="Vu, Bich Thi Ngoc" sort="Vu, Bich Thi Ngoc" uniqKey="Vu B" first="Bich Thi Ngoc" last="Vu">Bich Thi Ngoc Vu</name>
</country>
<country name="Australie">
<region name="Nouvelle-Galles du Sud">
<name sortKey="Eden, John Sebastian" sort="Eden, John Sebastian" uniqKey="Eden J" first="John-Sebastian" last="Eden">John-Sebastian Eden</name>
</region>
<name sortKey="Dwyer, Dominic E" sort="Dwyer, Dominic E" uniqKey="Dwyer D" first="Dominic E" last="Dwyer">Dominic E. Dwyer</name>
<name sortKey="Dwyer, Dominic E" sort="Dwyer, Dominic E" uniqKey="Dwyer D" first="Dominic E" last="Dwyer">Dominic E. Dwyer</name>
<name sortKey="Dwyer, Dominic E" sort="Dwyer, Dominic E" uniqKey="Dwyer D" first="Dominic E" last="Dwyer">Dominic E. Dwyer</name>
<name sortKey="Eden, John Sebastian" sort="Eden, John Sebastian" uniqKey="Eden J" first="John-Sebastian" last="Eden">John-Sebastian Eden</name>
<name sortKey="Rockett, Rebecca J" sort="Rockett, Rebecca J" uniqKey="Rockett R" first="Rebecca J" last="Rockett">Rebecca J. Rockett</name>
<name sortKey="Rockett, Rebecca J" sort="Rockett, Rebecca J" uniqKey="Rockett R" first="Rebecca J" last="Rockett">Rebecca J. Rockett</name>
</country>
<country name="Royaume-Uni">
<region name="Angleterre">
<name sortKey="Van Doorn, H Rogier" sort="Van Doorn, H Rogier" uniqKey="Van Doorn H" first="H Rogier" last="Van Doorn">H Rogier Van Doorn</name>
</region>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Sante/explor/CovidVariantV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000204 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000204 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Sante
   |area=    CovidVariantV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:33201914
   |texte=   Genetic diversity of SARS-CoV-2 and clinical, epidemiological characteristics of COVID-19 patients in Hanoi, Vietnam.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:33201914" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a CovidVariantV1 

Wicri

This area was generated with Dilib version V0.6.38.
Data generation: Tue Jan 26 18:10:18 2021. Site generation: Tue Jan 26 18:10:59 2021